School of Biotechnology

  Publications - Department of Proteomics (1998-)

Schwenk,J. Gry, M., Rimini, R.,Uhlén M. and Nilsson, P. (2008)
Antibody suspension bead arrays within serum proteomics
J Proteomics Research, in press
Berglund, L., Björling, Jonasson, Rockberg, Fagerberg, Al-Khalili Szigyarto, Sivertsson and Uhlén (2008)
A whole-genome bioinformatics approach to select antigens for systematic antibody generation
PROTEOMICS, in press
Paavilainen, L., Wernérus, H., Nilsson, P., Uhlén, M., Hober, S., Wester, K. and Pontén, F. (2008)
Evaluation of mono-specific antibodies: A comparison study with commercial analogues using immunohistochemistry on tissue microarrays
Appl Immunohistochem Mol Morphol, in press
Uhlén M. (2008)
Affinity as a tool in life science
Biotechnques 44: S649-S654
Berglund L, Andrade J, Odeberg J, Uhlén M. (2008)
The epitope space of the human proteome.
Protein Science 17(4):606-13.
Mathivanan et al (2008)
Human Proteinpedia enables sharing of human protein data.
Nature Biotechnol. 26(2):164-7.
Hamsten C, Westberg J, Bölske G, Ayling R, Uhlén M, Persson A. (2008)
Expression and immunogenicity of six putative variable surface proteins in
Mycoplasma mycoides subsp. mycoides SC.

Microbiology, 154:539-49.
Bjorling E., Lindskog C., Oksvold P., Linné J., Kampf C., Hober S., Uhlén M. and Pontén F. (2008)
A web-based tool for in silico biomarker discovery based on tissue-specific protein profiles in normal and cancer tissues.
Mol Cell Proteomics 2007 Oct 3; [Epub ahead of print]
Hober S. and Uhlen M. (2008)
Human protein atlas and the use of microarray technologies.
Curr Opin Biotechnol. 19: 30-35.
Barbe L, Lundberg E, Oksvold P, Stenius A, Lewin E, Bjorling E, Asplund A, Ponten F, Brismar H, Uhlen M and Andersson-Svahn H. (2008)
Towards a confocal subcellular atlas of the human proteome.
Mol Cell Proteomics 7(3):499-508
Sundqvist G., Stenvall M., Berglund H., Ottosson J. and Brumer H.
A general, robust method for the quality control of intact proteins using LC-ESI-MS
J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Jun 1;852(1-2):188-94.
Bengtsson, S., Krogh, M., Szigyarto, C. A., Uhlen, M., Schedvins, K., Silfversward, C., Linder, S., Auer, G., Alaiya, A. and James, P. (2007).
Large-scale proteomics analysis of human ovarian cancer for biomarkers
J Proteome Res. 6(4): 1440-50.
Lerner, M., Corcoran, M., Cepeda, D., Nielsen, M. L., Zubarev, R., Ponten, F., Uhlen, M., Hober, S., Grander, D. and Sangfelt, O. (2007).
The RBCC gene RFP2 (Leu5) encodes a novel transmembrane E3 ubiquitin ligase involved in ERAD
Mol Biol Cell 18(5): 1670-82.
Lundberg, E., Sundberg, M., Graslund, T., Uhlen, M. and Svahn, H. A. (2007).
A novel method for reproducible fluorescent labeling of small amounts of antibodies on solid phase
J Immunol Methods 322(1-2): 40-9.
Mulder, J., Wernerus, H., Shi, T. J., Ponten, F., Hober, S., Uhlen, M. and Hokfelt, T. (2007).
Systematically generated antibodies against human gene products: high throughput screening on sections from the rat nervous system
Neuroscience 146(4): 1689-703.
Orchard, S., Heck, A., Uhlen, M. and Ping, P. (2007).
Publication Committee meeting. HUPO 5th annual World Congress. Long Beach, CA, USA 30 October 2006
Proteomics 7(7): 1009-11.
Patrakka, J., Xiao, Z., Nukui, M., Takemoto, M., He, L., Oddsson, A., Perisic, L., Kaukinen, A., Szigyarto, C. A., Uhlen, M., Jalanko, H., Betsholtz, C. and Tryggvason, K. (2007).
Expression and subcellular distribution of novel glomerulus-associated proteins dendrin, ehd3, sh2d4a, plekhh2, and 2310066E14Rik
J Am Soc Nephrol 18(3): 689-97.
Schwenk, J. M., Lindberg, J., Sundberg, M., Uhlen, M. and Nilsson, P. (2007).
Determination of binding specificities in highly multiplexed bead-based assays for antibody proteomics
Mol Cell Proteomics 6(1): 125-32.
Stromberg, S., Bjorklund, M. G., Asplund, C., Skollermo, A., Persson, A., Wester, K., Kampf, C., Nilsson, P., Andersson, A. C., Uhlen, M., Kononen, J., Ponten, F. and Asplund, A. (2007).
A high-throughput strategy for protein profiling in cell microarrays using automated image analysis
Proteomics 7(13): 2142-50.
Taussig, M. J., Stoevesandt, O., Borrebaeck, C. A., Bradbury, A. R., Cahill, D., Cambillau, C., de Daruvar, A., Dubel, S., Eichler, J., Frank, R., Gibson, T. J., Gloriam, D., Gold, L., Herberg, F. W., Hermjakob, H., Hoheisel, J. D., Joos, T. O., Kallioniemi, O., Koegl, M., Konthur, Z., Korn, B., Kremmer, E., Krobitsch, S., Landegren, U., van der Maarel, S., McCafferty, J., Muyldermans, S., Nygren, P. A., Palcy, S., Pluckthun, A., Polic, B., Przybylski, M., Saviranta, P., Sawyer, A., Sherman, D. J., Skerra, A., Templin, M., Ueffing, M. and Uhlen, M. (2007).
ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome
Nat Methods 4(1): 13-7.
Uhlen, M. (2007).
Mapping the human proteome using antibodies
Mol Cell Proteomics 6(8): 1455-6.
Andersson, A. C., Stromberg, S., Backvall, H., Kampf, C., Uhlen, M., Wester, K. and Ponten, F. (2006).
Analysis of protein expression in cell microarrays: a tool for antibody-based proteomics
J Histochem Cytochem 54(12): 1413-23.
Andrade, J., Berglund, L., Uhlen, M. and Odeberg, J. (2006).
Using Grid technology for computationally intensive applied bioinformatics analyses
In Silico Biol 6(6): 495-504.
Ek, S., Andreasson, U., Hober, S., Kampf, C., Ponten, F., Uhlen, M., Merz, H. and Borrebaeck, C. A. (2006).
From gene expression analysis to tissue microarrays: a rational approach to identify therapeutic and diagnostic targets in lymphoid malignancies
Mol Cell Proteomics 5(6): 1072-81.
Eriksson C, Agaton C, Kange R, Sundberg M, Nilsson P, Ek B, Uhlen M, Gustafsson M, Hober S. (2006)
Microfluidic analysis of antibody specificity in a compact disk format.
J Proteome Res. 5(7):1568-74.
Haab BB, Paulovich AG, Anderson NL, Clark AM, Downing GJ, Hermjakob H, Labaer J, Uhlen M. (2006)
A Reagent Resource to Identify Proteins and Peptides of Interest for the Cancer Community: A workshop report.
Mol Cell Proteomics. 5(10):1996-2007.
Larsson K, Wester K, Nilsson P, Uhlen M, Hober S, Wernerus H. (2006)
Multiplexed PrEST immunization for high-throughput affinity proteomics.
J Immunol Methods. 315(1-2):110-20.
Persson A, Hober S, Uhlen M. (2006)
A human protein atlas based on antibody proteomics.
Curr Opin Mol Ther. 8(3):185-90.
Steen J, Uhlen M, Hober S, Ottosson J. (2006)
High-throughput protein purification using an automated set-up for high-yield affinity chromatography.
Protein Expr Purif. 46(2):173-8.
Hedhammar M, Stenvall M, Lonneborg R, Nord O, Sjolin O, Brismar H, Uhlen M, Ottosson J, Hober S. (2005)
A novel flow cytometry-based method for analysis of expression levels in Escherichia coli, giving information about precipitated and soluble protein.
J Biotechnol. 119(2):133-46.
Janzi M, Ödling J, Pan-Hammarström Q, Sundberg M, Lundeberg J, Uhlén M, Hammarström L, Nilsson P. (2005)
Serum microarrays for large scale screening of protein levels.
Mol Cell Proteomics. 4(12):1942-7.
Lindskog M, Rockberg J, Uhlen M, Sterky F. (2005)
Selection of protein epitopes for antibody production.
Biotechniques. 38(5):723-7.
Nilsson P, Paavilainen L, Larsson K, Ödling J, Sundberg M, Andersson A-C, Kampf C, Persson A, Al-Khalili Szigyarto C, Ottosson J, Björling E, Hober S, Wernérus H, Wester K, Pontén F, Uhlen M. (2005)
Towards a Human Protein Atlas - mono-specific antibodies for tissue profiling.
Proteomics. 5(17):4327-37.
Stenvall M, Steen J, Uhlen M, Hober S, Ottosson J (2005)
High-throughput solubility assay for purified recombinant protein immunogens.
BBA Proteins and Proteomics 1752(1):6-10
Uhlén M, Björling E, Agaton C, Szigyarto CA, Amini B, Andersen E, Andersson AC, Angelidou P, Asplund A, Asplund C, Berglund L, Bergström K, Brumer H, Cerjan D, Ekström M, Elobeid A, Eriksson C, Fagerberg L, Falk R, Fall J, Forsberg M, Björklund MG, Gumbel K, Halimi A, Hallin I, Hamsten C, Hansson M, Hedhammar M, Hercules G, Kampf C, Larsson K, Lindskog M, Lodewyckx W, Lund J, Lundeberg J, Magnusson K, Malm E, Nilsson P, Ödling J, Oksvold P, Olsson I, Öster E, Ottosson J, Paavilainen L, Persson A, Rimini R, Rockberg J, Runeson M, Sivertsson Å, Sköllermo A, Steen J, Stenvall M, Sterky F, Strömberg S, Sundberg M, Tegel H, Tourle S, Wahlund E, Waldén A, Wan J, Wernérus H, Westberg J, Wester K, Wrethagen U, Xu L, Hober S and Pontén F (2005)
A human protein atlas for normal and cancer tissues based on antibody proteomics.
Mol Cell Proteomics. 4(12):1920-32
Uhlen M, Ponten F. (2005)
Antibody-based Proteomics for Human Tissue Profiling.
Mol Cell Proteomics. 4(4):384-393
Agaton C, Falk R, Hoiden Guthenberg I, Gostring L, Uhlen M, Hober S. (2004)
Selective enrichment of monospecific polyclonal antibodies for antibody-based proteomics efforts.
J Chromatogr A. 1043(1):33-40.
Agaton C, Uhlen M, Hober S (2004)
Genome-based proteomics.
Electrophoresis. 25(9):1280-8.
Kampf C, Andersson A-C, Wester K, Björling E, Uhlen M, Ponten, F (2004)
Antibody-based tissue profiling as a tool in clinical proteomics.
Clin. Proteomics. 1(3-4):285-300
Agaton C, Galli J, Hoiden Guthenberg I, Janzon L, Hansson M, Asplund A, Brundell E, Lindberg S, Ruthberg I, Wester K, Wurtz D, Hoog C, Lundeberg J, Stahl S, Ponten F, Uhlen M. (2003)
Affinity proteomics for systematic protein profiling of chromosome 21 gene products in human tissues.
Mol Cell Proteomics. 2(6):405-14
Last updated: 2010-12-22