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The first non-immunoglobulin based framework for affinity
proteins were described in 1995. The new molecules were called
affibodies and were based on combinatorial protein engineering
of the small and robust a-helical structure of protein A.
Affibodies have since then found broad use as selective binding
reagents in biotechnology applications incl. separomics, diagnostics
and receptor blocking. Recently, systems based on affibodies
labelled for fluorescence resonance energy transfer (FRET)-based
detection have been developed to allow quantitative measurements
of non-labelled target molecules for applications in for example
protein “chip” formats. So-called anti-idiotypic
affibodies have also been developed, suitable for Self-assembled
Networks of Artificial Proteins (SNAP) to allow the build-up
of molecular micro structures. Recently, the structure of
an affibody-target co-complex was solved by both x-ray crystallography
and NMR. These structure showed upon a high charge and structural
complementarity in the binding interface, which had a size
in comparity with antibody-antigen systems. In parallel to
the use of phage display technology, new selection systems
for affibody libraries have also been developed both based
on Gram positive bacteria, FACS-sorting of micro beads and
protein contact assays.
| Key (own)
publications: |
1. |
Nord, O., Gustrin, A. and Nygren, P.-Å.
(2005) "Fluorescent detection of ß-lactamase
activity in living E. coli via esterase supplementation"
FEMS Microbiol Lett. 242):73-79. |
| 2. |
Eklund, M., Sandström K.,
Teeri, T. and Nygren, P.-Å. (2004) "Site-specific
and reversible anchoring of active proteins onto cellulose
using a cellulosome-like complex" J. Biotechnol. In
press. |
| 3. |
Sandström, K., Xu, Z., Forsberg, G.
and Nygren, P.-Å. (2003) "Inhibition of the CD28-CD80
co-stimulation signal by a CD28-binding ligand developed
by combinatorial protein engineering". Protein Engineering
6, 691-697. |
| 4. |
Nord, O., Uhlén, M. and Nygren, P.-Å.
(2003) "Microbead display of proteins by cell-free
expression of anchored DNA" J. Biotechnology 106, 1-13.
|
| 5. |
Wahlberg, E., Lendel, C., Helgstrand, M.,
Allard, P., Dincbas-Renqvist, V., Hedqvist, A., Berglund,
H., Nygren, P.-Å. and Härd, T. (2003) "An
affibody in complex with a target protein: structure and
coupled folding" Proc. Natl. Acad. Sci. U.S.A. 100,
3185-3190. |
6. |
Högbom, M., Eklund, M., Nygren, P.-Å.
and Nordlund P. (2003) "Crystal structure of an in
vitro evolved affibody-protein complex" Proc. Natl.
Acad. Sci. U.S.A. 100, 3191-3196. |
7. |
Rönnmark, J, Kampf, C., Asplund, A.,
Höidén-Guthenberg, Wester, K., I-M, Pontén,
F., Uhlén, M. and Nygren, P.-Å. (2003)"Affibody-b-galactosidase
immunoconjugates produced as soluble fusion proteins in
the E. coli cytosol". J. Immunol. Meth. 281, 149-160. |
8. |
Gräslund, S., Eklund, M., Falk, R.,
Uhlén, M., Nygren, P.-Å. and Ståhl, S.
(2002) "A novel affinity gene system allowing protein
A-based recovery of non-immunoglobulin gene products"
J. Biotechnol. 99, 41. |
9. |
Rönnmark, J., Hansson, M., Nguyen, T.,
Uhlén, M., Robert, A., Ståhl, S. and Nygren,
P.-Å. (2002) "Construction and characterization
of affibody-Fc chimeras produced in Escherichia coli"
J. Immunol. Meth. 261, 199-211. |
10. |
Andersson T., Unneberg P, Nilsson P, Odeberg
J, Quackenbush J and Lundeberg J., Monitoring of representational
difference analysis subtraction procedures by global microarrays,
2002, Biotechniques, 32:1348-1358. |
11. |
Karlström, A. and Nygren, P.-Å.
[2001] "Dual labeling of a binding protein allows for
specific fluorescence detection of native protein"
J. Anal. Biochem. 295, 22-30. |
12. |
Nord, K., Gunneriusson, E., Uhlén,
M. and Nygren, P.-Å. (2000) "Ligands selected
from combinatorial libraries of protein a for use in affinity
capture of apolipoprotein A-1 and Taq DNA polymerase"
J. Biotechnol. 80, 45-54. |
13. |
Eklund, Axelsson, Uhlen & Nygren Anti-idiotypic
protein domains selected from protein A-based affibody libraries.
Proteins 48, 454-462 (2002). |
14. |
Nord et al. Recombinant human factor VIII-specific
affinity ligands selected from phage-displayed combinatorial
libraries of protein A. Eur J Biochem 268, 4269-4277 (2001). |
15. |
Gunneriusson, Nord, Uhlen & Nygren Affinity
maturation of a Taq DNA polymerase specific affibody by
helix shuffling. Protein Eng 12, 873-878 (1999). |
16. |
Hansson et al. An in vitro selected binding
protein (affibody) shows conformation-dependent recognition
of the respiratory syncytial virus (RSV) G protein. Immunotechnology
4, 237-252 (1999). |
17. |
Nygren & Uhlen Scaffolds for engineering
novel binding sites in proteins. Curr Opin Struct Biol 7,
463-469 (1997). |
18. |
Nord et al. Binding proteins selected from
combinatorial libraries of an alpha-helical bacterial receptor
domain. Nature Biotechnol 15, 772-777 (1997). |
19. |
Nord, Nilsson, Nilsson, Uhlen & Nygren
A combinatorial library of an alpha-helical bacterial receptor
domain. Protein Eng 8, 601-608 (1995). |
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