School of Biotechnology
Proteomics
Achievements

  Affibodies – combinatorial binding molecules
Research groups
Summary
Human protein atlas
Mycoplasma mycoides
Antibody proteomics
Alkali stabilization
Tree genomics
Pyrosequencing
Single cell analysis
Affibodies
Biosensor (DNA)
Bioautomation
Surface display
Protein folding
In vivo stabilization
Solid phase methods
Protein G
Protein A
Affinity tags





The first non-immunoglobulin based framework for affinity proteins were described in 1995. The new molecules were called affibodies and were based on combinatorial protein engineering of the small and robust a-helical structure of protein A. Affibodies have since then found broad use as selective binding reagents in biotechnology applications incl. separomics, diagnostics and receptor blocking. Recently, systems based on affibodies labelled for fluorescence resonance energy transfer (FRET)-based detection have been developed to allow quantitative measurements of non-labelled target molecules for applications in for example protein “chip” formats. So-called anti-idiotypic affibodies have also been developed, suitable for Self-assembled Networks of Artificial Proteins (SNAP) to allow the build-up of molecular micro structures. Recently, the structure of an affibody-target co-complex was solved by both x-ray crystallography and NMR. These structure showed upon a high charge and structural complementarity in the binding interface, which had a size in comparity with antibody-antigen systems. In parallel to the use of phage display technology, new selection systems for affibody libraries have also been developed both based on Gram positive bacteria, FACS-sorting of micro beads and protein contact assays.

Key (own) publications:
1.
Nord, O., Gustrin, A. and Nygren, P.-Å. (2005) "Fluorescent detection of ß-lactamase activity in living E. coli via esterase supplementation" FEMS Microbiol Lett. 242):73-79.
2.
Eklund, M., Sandström K., Teeri, T. and Nygren, P.-Å. (2004) "Site-specific and reversible anchoring of active proteins onto cellulose using a cellulosome-like complex" J. Biotechnol. In press.
3.
Sandström, K., Xu, Z., Forsberg, G. and Nygren, P.-Å. (2003) "Inhibition of the CD28-CD80 co-stimulation signal by a CD28-binding ligand developed by combinatorial protein engineering". Protein Engineering 6, 691-697.
4.
Nord, O., Uhlén, M. and Nygren, P.-Å. (2003) "Microbead display of proteins by cell-free expression of anchored DNA" J. Biotechnology 106, 1-13.
5.
Wahlberg, E., Lendel, C., Helgstrand, M., Allard, P., Dincbas-Renqvist, V., Hedqvist, A., Berglund, H., Nygren, P.-Å. and Härd, T. (2003) "An affibody in complex with a target protein: structure and coupled folding" Proc. Natl. Acad. Sci. U.S.A. 100, 3185-3190.
6.
Högbom, M., Eklund, M., Nygren, P.-Å. and Nordlund P. (2003) "Crystal structure of an in vitro evolved affibody-protein complex" Proc. Natl. Acad. Sci. U.S.A. 100, 3191-3196.
7.
Rönnmark, J, Kampf, C., Asplund, A., Höidén-Guthenberg, Wester, K., I-M, Pontén, F., Uhlén, M. and Nygren, P.-Å. (2003)"Affibody-b-galactosidase immunoconjugates produced as soluble fusion proteins in the E. coli cytosol". J. Immunol. Meth. 281, 149-160.
8.
Gräslund, S., Eklund, M., Falk, R., Uhlén, M., Nygren, P.-Å. and Ståhl, S. (2002) "A novel affinity gene system allowing protein A-based recovery of non-immunoglobulin gene products" J. Biotechnol. 99, 41.
9.
Rönnmark, J., Hansson, M., Nguyen, T., Uhlén, M., Robert, A., Ståhl, S. and Nygren, P.-Å. (2002) "Construction and characterization of affibody-Fc chimeras produced in Escherichia coli" J. Immunol. Meth. 261, 199-211.
10.
Andersson T., Unneberg P, Nilsson P, Odeberg J, Quackenbush J and Lundeberg J., Monitoring of representational difference analysis subtraction procedures by global microarrays, 2002, Biotechniques, 32:1348-1358.
11.
Karlström, A. and Nygren, P.-Å. [2001] "Dual labeling of a binding protein allows for specific fluorescence detection of native protein" J. Anal. Biochem. 295, 22-30.
12.
Nord, K., Gunneriusson, E., Uhlén, M. and Nygren, P.-Å. (2000) "Ligands selected from combinatorial libraries of protein a for use in affinity capture of apolipoprotein A-1 and Taq DNA polymerase" J. Biotechnol. 80, 45-54.
13.
Eklund, Axelsson, Uhlen & Nygren Anti-idiotypic protein domains selected from protein A-based affibody libraries. Proteins 48, 454-462 (2002).
14.
Nord et al. Recombinant human factor VIII-specific affinity ligands selected from phage-displayed combinatorial libraries of protein A. Eur J Biochem 268, 4269-4277 (2001).
15.
Gunneriusson, Nord, Uhlen & Nygren Affinity maturation of a Taq DNA polymerase specific affibody by helix shuffling. Protein Eng 12, 873-878 (1999).
16.
Hansson et al. An in vitro selected binding protein (affibody) shows conformation-dependent recognition of the respiratory syncytial virus (RSV) G protein. Immunotechnology 4, 237-252 (1999).
17.
Nygren & Uhlen Scaffolds for engineering novel binding sites in proteins. Curr Opin Struct Biol 7, 463-469 (1997).
18.
Nord et al. Binding proteins selected from combinatorial libraries of an alpha-helical bacterial receptor domain. Nature Biotechnol 15, 772-777 (1997).
19.
Nord, Nilsson, Nilsson, Uhlen & Nygren A combinatorial library of an alpha-helical bacterial receptor domain. Protein Eng 8, 601-608 (1995).
Last updated: 2010-12-22