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A surface plasmon resonance based optical device
for mass sensitive detection of biomolecular interactions
at a chip surface was utilized for the first time for quantitative
real-time analysis of the action of DNA manipulating enzymes,
such as ligase, restriction nucleases and polymerases (1).
Sequence-based DNA analysis, first introduced with oligonucleotide
model systems, was extended to the scanning and screening
for mutations in PCR amplified DNA from clinically relevant
samples (2,3). The experimental set-up for mutation detection
was further developed by the introduction of a subtractive
mismatch sensitive hybridization outside the instrument and
a subsequent determination of the relative amounts of remaining
oligonucleotides with analytical biosensor monitoring of hybridizations
between fully complementary oligonucleotides (4,5). In conclusion,
the applied technology was found to be a suitable tool for
a wide range of molecular biology applications, with emphasis
on hybridization analysis and mutation detection.
| Key (own)
publications: |
| 1. |
Nilsson, P., Persson, B., Uhlén,
M. and Nygren, P-Å., (1995). Real-time monitoring
of DNA manipulations using biosensor technology. Anal. Biochem.
224: 400-408. |
| 2. |
Nilsson, P., Persson, B., Larsson, A., Uhlén,
M. and Nygren, P-Å., (1997). Detection of mutations
in PCR products from clinical samples by surface plasmon
resonance. J. Mol. Recognit. 10:7-17. |
| 3. |
Persson, B., Stenhag, K., Nilsson, P., Larsson,
A., Uhlén, M. and Nygren, P-Å., (1997). Analysis
of oligonucleotide probe affinities using surface plasmon
resonance: a means for mutational scanning. Anal. Biochem.
246: 34-44. |
| 4. |
Nilsson, P., Larsson, A., Lundeberg, J.,
Uhlén, M. and Nygren, P-Å., (1999). Mutational
scanning of PCR products by subtractive oligonucleotide
hybridization analysis. BioTechniques, 26:308-316. |
5. |
Nilsson, P., O’Meara, D., Edebratt,
F., Persson, B., Uhlén, M., Lundeberg, J. and Nygren,
P-Å., (1999). Quantitative investigation of the modular
primer effect for DNA and peptide nucleic acid hexamers.
Anal. Biochem., 269: 155-161. |
6. |
O´Meara D., Nilsson P., Nygren P-Å,
Uhlén M. and Lundeberg J. Capture of single stranded
DNA assisted by oligonucleotides modules. 1998, Anal Biochem
255, 195-203 |
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