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  Biosensor analysis of DNA manipulations
Research groups
Summary
Mycoplasma mycoides
The origin of dogs
AMASE
Tree genomics
Pyrosequencing
Single cell analysis
Biosensor (DNA)
Bioautomation
Solid phase methods



A surface plasmon resonance based optical device for mass sensitive detection of biomolecular interactions at a chip surface was utilized for the first time for quantitative real-time analysis of the action of DNA manipulating enzymes, such as ligase, restriction nucleases and polymerases (1). Sequence-based DNA analysis, first introduced with oligonucleotide model systems, was extended to the scanning and screening for mutations in PCR amplified DNA from clinically relevant samples (2,3). The experimental set-up for mutation detection was further developed by the introduction of a subtractive mismatch sensitive hybridization outside the instrument and a subsequent determination of the relative amounts of remaining oligonucleotides with analytical biosensor monitoring of hybridizations between fully complementary oligonucleotides (4,5). In conclusion, the applied technology was found to be a suitable tool for a wide range of molecular biology applications, with emphasis on hybridization analysis and mutation detection.

Key (own) publications:
1.
Nilsson, P., Persson, B., Uhlén, M. and Nygren, P-Å., (1995). Real-time monitoring of DNA manipulations using biosensor technology. Anal. Biochem. 224: 400-408.
2.
Nilsson, P., Persson, B., Larsson, A., Uhlén, M. and Nygren, P-Å., (1997). Detection of mutations in PCR products from clinical samples by surface plasmon resonance. J. Mol. Recognit. 10:7-17.
3.
Persson, B., Stenhag, K., Nilsson, P., Larsson, A., Uhlén, M. and Nygren, P-Å., (1997). Analysis of oligonucleotide probe affinities using surface plasmon resonance: a means for mutational scanning. Anal. Biochem. 246: 34-44.
4.
Nilsson, P., Larsson, A., Lundeberg, J., Uhlén, M. and Nygren, P-Å., (1999). Mutational scanning of PCR products by subtractive oligonucleotide hybridization analysis. BioTechniques, 26:308-316.
5.
Nilsson, P., O’Meara, D., Edebratt, F., Persson, B., Uhlén, M., Lundeberg, J. and Nygren, P-Å., (1999). Quantitative investigation of the modular primer effect for DNA and peptide nucleic acid hexamers. Anal. Biochem., 269: 155-161.
6.
O´Meara D., Nilsson P., Nygren P-Å, Uhlén M. and Lundeberg J. Capture of single stranded DNA assisted by oligonucleotides modules. 1998, Anal Biochem 255, 195-203
Last updated: 2008-06-16