Bibliography — Afshin Ahmadian
March 17
46. |
Neiman, M., et al., Decoding a Substantial Set of Samples in Parallel by Massive Sequencing. PLoS One, 2011. 6(3). |
45. |
Sandberg, J., et al., Gene-specific FACS sorting method for target selection in high-throughput amplicon sequencing. BMC Genomics, 2010. 11: p. 140. |
44. |
Zajac, P., C. Oberg, and A. Ahmadian, Analysis of short tandem repeats by parallel DNA threading. PLoS One, 2009. 4(11): p. e7823. |
43. |
Sandberg, J., et al., Flow cytometry for enrichment and titration in massively parallel DNA sequencing. Nucleic Acids Res, 2009. 37(8): p. e63 |
42. |
Pettersson, E., et al., Visual DNA as a diagnostic tool. Electrophoresis, 2009. 30(21): p. 3691-5. |
41. |
Pettersson, E., J. Lundeberg, and A. Ahmadian, Generations of sequencing technologies. Genomics, 2009. 93(2): p. 105-11. |
40. |
Lindstrom, S., et al., PCR amplification and genetic analysis in a microwell cell culturing chip. Lab Chip, 2009. 9(24): p. 3465-71. |
39. |
Hoiom, V., et al., MC1R variation and melanoma risk in the Swedish population in relation to clinical and pathological parameters. Pigment Cell Melanoma Res, 2009. 22(2): p. 196-204. |
38. |
Zajac, P., et al., Expression profiling of signature gene sets with trinucleotide threading. Genomics, 2008. 91(2): p. 209-17. |
37. |
Suri, F., et al., Screening of common CYP1B1 mutations in Iranian POAG patients using a microarray-based PrASE protocol. Mol Vis, 2008. 14: p. 2349-56. |
36. |
Pettersson, E., et al., Allelotyping by massively parallel pyrosequencing of SNP-carrying trinucleotide threads. Hum Mutat, 2008. 29(2): p. 323-9. |
35. |
Stahl, P.L., et al., Visual DNA -- identification of DNA sequence variations by bead trapping. Genomics, 2007. 90(6): p. 741-5. |
34. |
Kaller, M., J. Lundeberg, and A. Ahmadian, Arrayed identification of DNA signatures. Expert Rev Mol Diagn, 2007. 7(1): p. 65-76. |
33. |
Pettersson, E., et al., Tri-nucleotide threading for parallel amplification of minute amounts of genomic DNA. Nucleic Acids Res, 2006. 34(6): p. e49. |
| 32. |
Kaller, M., et al., Comparison of PrASE and Pyrosequencing for SNP Genotyping. BMC Genomics, 2006. 7: p. 291. |
31. |
Ahmadian, A., M. Ehn, and S. Hober, Pyrosequencing: history, biochemistry and future. Clin Chim Acta, 2006. 363(1-2): p. 83-94. |
| 30. |
Kaller, M., et al., Detection of MC1R polymorphisms with protease-mediated allele-specific extension as an alternative to direct sequencing. Clin Chem, 2005. 51(12): p. 2388-91. |
| 29. |
Kaller, M., et al., Tag-array based HPV genotyping by competitive hybridization and extension. J Virol Methods, 2005. 129(2): p. 102-12. |
| 28. |
Hultin, E., et al., Competitive enzymatic reaction to control allele-specific extensions. Nucleic Acids Res, 2005. 33(5): p. e48. |
| 27. |
Gharizadeh, B., et al., Type-specific multiple sequencing primers: a novel strategy for reliable and rapid genotyping of human papillomaviruses by pyrosequencing technology. J Mol Diagn, 2005. 7(2): p. 198-205. |
| 26. |
Asplund, A., et al., Genetic mosaicism in basal cell carcinoma. Exp Dermatol, 2005. 14(8): p. 593-600. |
| 25. |
Kaller, M., A. Ahmadian, and J. Lundeberg, Microarray-based AMASE as a novel approach for mutation detection. Mutat Res, 2004. 554(1-2): p. 77-88. |
| 24. |
Ehn, M., et al., Toward pyrosequencing on surface-attached genetic material by use of DNA-binding luciferase fusion proteins. Anal Biochem, 2004. 329(1): p. 11-20. |
| 23. |
Russom, A., et al., Single-nucleotide polymorphism analysis by allele-specific extension of fluorescently labeled nucleotides in a microfluidic flow-through device. Electrophoresis, 2003. 24(1-2): p. 158-61. |
| 22. |
Gharizadeh, B., et al., Viral and microbial genotyping by a combination of multiplex competitive hybridization and specific extension followed by hybridization to generic tag arrays. Nucleic Acids Res, 2003. 31(22): p. e146. |
| 21. |
Ericsson, O., et al., Microarray-based resequencing by apyrase-mediated allele-specific extension. Electrophoresis, 2003. 24(19-20): p. 3330-8. |
| 20. |
O'Meara, D., et al., SNP typing by apyrase-mediated allele-specific primer extension on DNA microarrays. Nucleic Acids Res, 2002. 30(15): p. e75. |
| 19. |
Gharizadeh, B., et al., Long-read pyrosequencing using pure 2'-deoxyadenosine-5'-O'-(1-thiotriphosphate) Sp-isomer. Anal Biochem, 2002. 301(1): p. 82-90. |
| 18. |
Ehn, M., et al., Escherichia coli single-stranded DNA-binding protein, a molecular tool for improved sequence quality in pyrosequencing. Electrophoresis, 2002. 23(19): p. 3289-99. |
| 17. |
Ahmadian, A., et al., SNP analysis by allele-specific extension in a micromachined filter chamber. Biotechniques, 2002. 32(4): p. 748, 750, 752, 754. |
| 16. |
Ahmadian, A. and J. Lundeberg, A brief history of genetic variation analysis. Biotechniques, 2002. 32(5): p. 1122-4, 1126, 1128 passim. |
| 15. |
Ling, G., et al., PATCHED and p53 gene alterations in sporadic and hereditary basal cell cancer. Oncogene, 2001. 20(53): p. 7770-8. |
| 14. |
Gustafsson, A.C., et al., HPV-related cancer susceptibility and p53 codon 72 polymorphism. Acta Derm Venereol, 2001. 81(2): p. 125-9. |
| 13. |
Ahmadian, A., et al., Genotyping by apyrase-mediated allele-specific extension. Nucleic Acids Res, 2001. 29(24): p. E121. |
| 12. |
Garcia, C.A., et al., Mutation detection by pyrosequencing: sequencing of exons 5-8 of the p53 tumor suppressor gene. Gene, 2000. 253(2): p. 249-57. |
| 11. |
Ahmadian, A., et al., Analysis of the p53 tumor suppressor gene by pyrosequencing. Biotechniques, 2000. 28(1): p. 140-4, 146-7. |
10. |
Ahmadian, A., et al., Single-nucleotide polymorphism analysis by pyrosequencing. Anal Biochem, 2000. 280(1): p. 103-10. |
9. |
Odeberg, J., et al., Context-dependent Taq-polymerase-mediated nucleotide alterations, as revealed by direct sequencing of the ZNF189 gene: implications for mutation detection. Gene, 1999. 235(1-2): p. 103-9. |
8. |
Williams, C., et al., Clones of normal keratinocytes and a variety of simultaneously present epidermal neoplastic lesions contain a multitude of p53 gene mutations in a xeroderma pigmentosum patient. Cancer Res, 1998. 58(11): p. 2449-55. |
7. |
Williams, C., et al., Assessment of sequence-based p53 gene analysis in human breast cancer: messenger RNA in comparison with genomic DNA targets. Clin Chem, 1998. 44(3): p. 455-62. |
6. |
Odeberg, J., et al., Cloning and characterization of ZNF189, a novel human Kruppel-like zinc finger gene localized to chromosome 9q22-q31. Genomics, 1998. 50(2): p. 213-21. |
5. |
Ahmadian, A., et al., Genetic instability in the 9q22.3 region is a late event in the development of squamous cell carcinoma. Oncogene, 1998. 17(14): p. 1837-43. |
4. |
Ren, Z.P., et al., Benign clonal keratinocyte patches with p53 mutations show no genetic link to synchronous squamous cell precancer or cancer in human skin. Am J Pathol, 1997. 150(5): p. 1791-803. |
3. |
Ponten, F., et al., Genomic analysis of single cells from human basal cell cancer using laser-assisted capture microscopy. Mutat Res, 1997. 382(1-2): p. 45-55. |
2. |
Ponten, F., et al., Molecular pathology in basal cell cancer with p53 as a genetic marker. Oncogene, 1997. 15(9): p. 1059-67. |
1. |
Ren, Z.P., et al., Human epidermal cancer and accompanying precursors have identical p53 mutations different from p53 mutations in adjacent areas of clonally expanded non-neoplastic keratinocytes. Oncogene, 1996. 12(4): p. 765-73. |
|
